Comparing whole genomes using DNA microarrays. Gresham D, Dunham MJ, Botstein D. Nat Rev Genet. 2008 Apr;9(4):291-302. [Pubmed][Nature Reviews Genetics][PDF]

Effects of aneuploidy on cellular physiology and cell division in haploid yeast. Torres EM, Sokolsky T, Tucker CM, Chan LY, Boselli M, Dunham MJ and Amon A. Science. 2007 Aug 17;317(5840):916-24. [Pubmed][Science][PDF][Science Perspective][The Scientist News][Nature Reviews Molecular Cell Biology Research Highlight][JCB Research Highlight]

Viewing the Larger Context of Genomic Horizontal Integration. Matthew Hibbs, Grant Wallace, Maitreya Dunham, Kai Li, and Olga Troyanskaya. Proceedings of the 11th Int. Conf. on Information Visualization (IV07), 2007.[IEEE][PDF]

Synthetic ecology: a model system for cooperation. Dunham MJ. Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1741-2. Epub 2007 Jan 31. [Pubmed][PNAS][PDF]

Global Mapping of Transposon Location. Gabriel A, Dapprich J, Kunkel M, Gresham D, Pratt SC, Dunham MJ. PLoS Genet. 2006 Dec 15;2(12):e212. [Pubmed][PLoS Genetics][PDF][supplement]

Functional analysis of gene duplications in Saccharomyces cerevisiae. Guan Y, Dunham MJ, Troyanskaya OG. Genetics. 2006 Dec 6. [Pubmed][Genetics][PDF]

Mapping Novel Traits by Array-assisted Bulk Segregant Analysis in Saccharomyces cerevisiae. Brauer MJ, Christianson CM, Pai DA, Dunham MJ. Genetics. 2006 Jul;173(3):1813-6. Epub 2006 Apr 19. [Pubmed][Genetics][PDF][Web Supplement]

Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray. Gresham D, Ruderfer DM, Pratt SC, Schacherer J, Dunham MJ, Botstein D, Kruglyak L. Science. 2006 Mar 31;311(5769):1932-6. Epub 2006 Mar 9. [Pubmed][Science][PDF][Web Supplement]

Accurate detection of aneuploidies in array CGH and gene expression microarray data. Myers CL, Dunham MJ, Kung SY, Troyanskaya OG. Bioinformatics. 2004 Dec 12;20(18):3533-43. Epub 2004 Jul 29. [Pubmed][Bioinformatics][PDF][Press Release]

Characteristic Genome Rearrangements in Experimental Evolution of S. cerevisiae. Dunham MJ, Badrane H, Ferea T, Adams J, Brown PO, Rosenzweig RF, Botstein D. Proc Natl Acad Sci USA. 2002 Dec 10;99(25):16144-9. [Pubmed][PNAS][PDF][Web supplement][Science Editor's Choice]

Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Haab BB, Dunham MJ, Brown PO. Genome Biology. 2001;2(2):RESEARCH0004. [Pubmed][Genome Biology][PDF][Web supplement][Genome Biology Minireview]

Asymmetric leaves1 mediates leaf patterning and stem cell function in Arabidopsis. Byrne ME, Barley R, Curtis M, Arroyo JM, Dunham M, Hudson A, Martienssen RA. Nature. 2000 Dec 21-28;408(6815):967-71. [Pubmed][Nature][PDF]

ika1 and rag1 as Markers for the Development of the Zebrafish Immune System. Dunham MJ and Steiner L. Biology Undergraduate Journal. Volume 2, Spring 1999. [MIT BUG Journal][PDF]