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Integrated Science Shorts Series The aim of this monthly series is to present new and developing work and to foster discussion amongst members of our Quantitative and Computation Biology group, in diverse disciplines. Each meeting comprises two 20-minute talks from two different labs with 10 minutes for questions/discussion. Seminars are in Carl Icahn Lab 101 at 4:30pm. 2008-2009 Tuesday, October 07, 2008 Hani Goodarzi / Kellen Olszewski, Tavazoie/ Llinás Hani Goodarzi - Revealing the genetic mechanisms of ethanol tolerance Kellen Olszewski - Probing central carbon metabolism in Plasmodium falciparum Tuesday, October 21, 2008 Wilfred Ndifon / Greg Lang, Levin Lab / Botstein Lab Wilfred Ndifon- Empirical support for some theoretical insights into the nature of influenza surveillance data Greg Lang - title tba Tuesday, November 18, 2008 Daniel Amador-Noguez / Tao Long, Rabinowitz / Bassler & Wingreen Making the change: A generic “standby” state of glycolysis precedes the diauxic shift in E. coli (Amador-Noguez) Quantitative study on bacterial quorum sensing using single-cell microscopy (Long) Tuesday, December 09, 2008 Johanna Scarino (Coller) / Eva-Maria Schoetz (Lewis-Sigler Fellow), Coller and Schoetz labs Scarino - Active Metabolism in Quiescent Fibroblasts / Schoetz - Axis patterning and regeneration polarity in Planarians Tuesday, February 17, 2009 Narayanan Raghupathy / Samuel Taylor, Storey Group / Bialek Group Association Studies in the Presence of Population Structure and Molecular Heterogeneity (Raghupathy) / Information and Fitness (Taylor) Tuesday, March 24, 2009 Mingzhai Sun / Eva-Maria Schoetz, Shaevitz group / Lewis-Sigler Fellow Prokaryotic cell mechanics probed with AFM (Sun) / Telling head from tail: Anterior-posterior polarity re-establishment during regeneration in Planaria (Schoetz) Tuesday, April 21, 2009 Matthias Kaschube / Justin Kinney, Kaschube/Wieschaus / Cox/Callan From morphogenesis to morphodynamics (Kaschube) / Biophysics from sequence data (Kinney) Tuesday, May 19, 2009 Gunnar Kleemann / Deniz Erezyilmaz, Murphy Group / Stern Group Exploring hidden variation in lifespan using selected recombinant inbred lines (Kleemann) / An evolved difference in decision making between two sister species of Drosophila (Erezyilmaz) 2007-2008 Tuesday, September 25, 2007 David Hess / Pankaj Mehta, Caudy & Troyanskaya Labs / Wingreen Lab Large scale discovery of mitochondrial gene function using computation-driven experimentation What can quantitative analysis teach us about noise-driven switching in genetic networks? Tuesday, October 16, 2007 David Gresham / Mike Fisher, Botstein Lab / Hecht Lab Usual and unusual transcription in yeast /Proteins from a designed model proteome rescue E. coli conditional auxotrophs Tuesday, November 20, 2007 Yun Kyung "Sophia" Kwon / Aster Legesse-Miller, Rabinowitz Lab / Coller Lab A domino effect in antifolate drug action / The role of microRNAs in the transition between proliferation and quiescence Tuesday, December 11, 2007 Hannah Seidel / Matt Hibbs, Kruglyak Lab / Troyanskaya Lab Widespread genetic incompatibility in C. elegans maintained by balancing selection (Seidel) Query-driven search methods for gene expression microarray analysis (Hibbs) Tuesday, February 19, 2008 Michael Desai / Kelly McCarthy, Lewis-Sigler Fellow / Enquist Lab Detecting Directional Selection from the Polymorphism Frequency Spectrum (Desai) The effects of herpesvirus infection on neuronal electrophysiology (McCarthy) Tuesday, March 25, 2008 Maitreya Dunham & Chris Bristow, Lewis-Sigler Fellow / Shvartsman Lab Functional annotation of a novel yeast genome by a computer-controlled army of undergraduates (Dunham) A combinatorial code for epithelial patterning by interacting signaling pathways (Bristow) Tuesday, April 15, 2008 Zia Khan / Carey Nadell, Singh & Kruglyak Labs / Bassler Lab Data! Too much data! Measuring Transcript Abundance by High Throughput Sequencing and Protein Abundance by High Resolution Mass Spectrometry (Khan) Social evolution in bacterial biofilms (Nadell) Tuesday, May 20, 2008 Sasan Amini / Ethan Perlstein, Tavazoie Lab / Lewis-Sigler Fellow Genetic Dissection of an Exogenously-Induced Biofilm in Laboratory and Clinical Isolates of E. coli (Amini) / Assessing the evolutionary conservation of therapeutic drug action in yeast (Perlstein) 2006-2007 Tuesday, October 17, 2006 Kerwyn Casey Huang / Matt Rockman, Wingreen Lab / Kruglyak Lab Kerwyn Casey Huang -Polar expeditions: how membranes segregate in rod-shaped bacteria Matt Rockman - Worms require the snot gene for copulatory plugging Tuesday, November 21, 2006 Chris Farrell / Justin Kinney, Broach Lab / Callan Lab Chris Farrell - Identification of phosphorylation sites on signaling proteins in Saccharomyces cerivisiae Justin Kinney - Precise physical models of protein-DNA interaction from high-throughput data Tuesday, December 19, 2006 Woojin Kim / Curtis Huttenhower, Michael Hecht Lab / Olga Troyanskaya Lab Woojin Kim - Sequence Determinants and Inhibition of the Aggregation of the Alzheimer's Abeta Peptide Curtis Huttenhower - Integration and Functional Analysis of Microarray Data Sets Tuesday, February 20, 2007 Nir Yakoby / Georgii Bazykin, Stas Shvartsman Lab / Simon Levin Lab Nir Yakoby - Feedforward control of pattern formation in a developing tissue Georgii Bazykin - Extensive parallelism in protein evolution Tuesday, March 20, 2007 Hany Girgis (Tavazoie lab) / Chris Waters (Bassler lab), Tank Lab & Bassler Lab Girgis: A Post-Genomic Approach to the Genetic Basis of Bacterial Motility Waters: Quorum Sensing and the second messenger signal, cyclic di-GMP, coordinately regulate biofilm formation in Vibrio cholerae Tuesday, April 17, 2007 Liang Li / Greg Stephens, Cox Lab and Greg Stephens The shape of behavior: dimensionality and dynamics in the natural movement of C. elegans (Stephens) Searching strategies in Dictyostelium (Li) Tuesday, May 22, 2007 Daniel Dombeck / Melissa Cody, Tank Lab / Groves Lab Imaging neural population activity in awake behaving mice (Dombeck) Great Balls of Iron: The Role of Ferritins and DPS Proteins in the Stress Response (Cody) BACK TO TOP Last updated: Copyright © 2007 Lewis-Sigler Institute for Integrative Genomics. 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